2022

Genomic Epidemiology of Seasonal Influenza Circulation in China During Prolonged Border Closure from 2020 to 2021.

Xie et al. 2022. Virus Evolution

Off-season RSV epidemics in Australia after easing of COVID-19 restrictions.

Eden et al. 2022. Nat Commun

Human seasonal influenza under COVID-19 and the potential consequences of influenza lineage elimination.

Dhanasekaran et al. 2022. Nat Commun

Genomic epidemiology of SARS-CoV-2 under an elimination strategy in Hong Kong.

Gu et al. 2022. Nat Commun

Monitoring International Travelers Arriving in Hong Kong for Genomic Surveillance of SARS-CoV-2.

Gu et al. 2022. Emerging Infectious Diseases

2021

Influenza A(H3N2) outbreak in Cambodia and the Greater Mekong Subregion during the COVID-19 pandemic, 2020.

Siegers et al. 2021. Journal of Virology

Air travel-related outbreak of multiple SARS-CoV-2 variants.

Dhanasekaran et al. 2021. Journal of Travel Medicine

Genetic diversity of SARS-CoV-2 among travelers arriving in Hong Kong

Gu et al. 2021. Emerging Infectious Diseases

Lineage-specific protection and immune imprinting shape the age distributions of influenza B cases

Vieira et al. 2021. Nature Communications

Five challenges in the field of viral diversity and evolution

Sanjuán et al. 2021. Frontiers in Virology

Reassortment and persistence of influenza A viruses from diverse geographic origins within Australian wild birds- evidence from a small, isolated population of Ruddy turnstones

Hoye et al. 2021. Journal of Virology

Detection of Tioman Virus in Pteropus vampyrus Near Flores, Indonesia

Tsang et al. 2021. Viruses

2020

Forensic genomics of a novel Klebsiella quasipneumoniae type from a neonatal intensive care unit in China reveals patterns of colonization, evolution and epidemiology

Perlaza-Jiménez et al. 2021. Microbial Genomics

First description of antimicrobial resistance in carbapenem-susceptible Klebsiella pneumoniae after imipenem treatment, driven by outer membrane remodeling

Tian et al. 2020. BMC Microbiology

CD4⁺ T Cells Recognize Conserved Influenza A Epitopes through Shared Patterns of V-Gene Usage and Complementary Biochemical Features

Greenshields-Watson et al. 2020. Cell Reports

Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations

Duchene et al. 2020. Molecular Biology and Evolution

Epidemiological trends in notified influenza cases in Australia’s Northern Territory, 2007‐2016

Weinman et al. 2020. Influenza and Other Respiratory Viruses

Global Transmission, Spatial Segregation, and Recombination Determine the Long-Term Evolution and Epidemiology of Bovine Coronaviruses

Salem et al. 2020. Viruses

A rapid pyrosequencing assay for the molecular detection of influenza viruses with reduced baloxavir susceptibility due to PA/I38X amino acid substitutions

Salem et al. 2020. Influenza and Other Respiratory Viruses

Positive epistasis between viral polymerase and 3’ untranslated region of its genome reveals epidemiological fitness of dengue virus

Syenina et al. 2020. PNAS

Influenza A-associated severe pneumonia in hospitalized patients- Risk factors and NAI treatments

Zou et al. 2020. International Journal of Infectious Diseases

Locally Acquired Human Infection with Swine-Origin Influenza A(H3N2) Variant Virus, Australia, 2018

Deng et al. 2020. Emerging Infectious Diseases

Genome-Scale Phylogeny and Evolutionary Analysis of Ross River Virus Reveals Periodic Sweeps of Lineage Dominance in Western Australia, 1977-2014

Mitchie et al. 2020. Journal of Virology

Divergent evolutionary trajectories of influenza B viruses underlie their contemporaneous epidemic activity

Virk et al. 2020. PNAS

2019

Emergence of Influenza A(H7N4) Virus, Cambodia

Dhanasekaran et al. 2019. Emerging Infectious Diseases

Dengue disease severity caused by elevated secreted NS1 arising from a single T164S mutation

Chan et al. 2019. Science Translational Medicine

Antarctic penguins as reservoirs of diversity for avian avulaviruses

Wille et al. 2019. Journal of Virology

Baloxavir marboxil susceptibility of influenza viruses from the Asia-Pacific, 2012–2018

Koszalka et al. 2019. Antiviral Research

Universally cross-reactive CD8+ T cell immunity across influenza A, B and C viruses

Kotsoukas et al. 2019. Nature Immunology

2018

FusC, a member of the M16 protease family acquired by bacteria for iron piracy against plants.

Grinter et al. 2018. PLoS Biology

Divergent human origin influenza viruses detected in Australian swine populations.

Wong et al. 2018. Journal of Virology

2017

Evolution and spatio-temporal dynamics of Enterovirus A71 subgenogroups in Vietnam.

Thao et al. 2017. The Journal of Infectious Diseases

Evidence for viral interference and cross-reactive protective immunity between influenza B lineages.

Laurie et al. 2017. The Journal of Infectious Diseases

Adaptive evolution during the establishment of European avian-like H1N1 influenza A virus in swine.

Joseph et al. 2017. Evolutionary Applications

The Broad Host Range and Genetic Diversity of Mammalian and Avian Astroviruses.

Donato and Vijaykrishna. 2017. Viruses.

2016

Evidence for the introduction, reassortment and persistence of diverse influenza A viruses in Antarctica

Hurt et al. 2016. Journal of Virology.

Extended evaluation of virological, immunological and pharmacokinetic endpoints of CELADEN - a randomized controlled trial of celgosivir in dengue fever patients

Sung et al. 2016. PLoS Neglected Tropical Diseases.

The ecology and adaptive evolution of influenza A interspecies transmission

Joseph et al. 2016. Influenza and Other Respiratory Viruses.

A role of influenza exposure history in determining pandemic susceptibility and CD8+ T cell responses

Quinones-Parra et al. 2016. Journal of Virology.

Genetic characterization of Enterovirus 71 strains circulating in Vietnam in 2012

Donato et al. 2016. Virology.

Differential age susceptibility to influenza B/Victoria lineage viruses in the 2015 Australian influenza season

Barr et al. 2016. Eurosurveillance.

2015

Phylodynamics of H1N1/2009 influenza reveals the transition from host adaptation to immune-driven selection.

Su et al. 2015. Nature Communications.

RNA virus reassortment - An evolutionary mechanism for host jumps and immune evasion

Dhanasekaran et al. 2015. PLoS Pathogens.

Ecological drivers of virus evolution - Astrovirus as a case study.

Mendenhall et al. 2015. J Virol.

The contrasting phylodynamics of influenza B viruses.

Dhanasekaran et al. 2015. eLife.

2014

Molecular epidemiology of influenza A H1N1 pandemic 2009 virus in humans and swine in Sri Lanka.

Perera et al. 2014. Emerg Infect Dis.

Adaptation of pandemic H2N2 influenza A viruses in humans.

Joseph et al. 2015. J Virol.

Identification and molecular characterization of novel and divergent Hobi-like pestiviruses from naturally infected cattle in India.

Mishra et al. 2014. Veterinary Microbiology.

Detection of evolutionarily distinct avian influenza A viruses in antarctica

Hurt et al. 2014. mBio.

Preexisting CD8+ T-cell immunity to the H7N9 influenza A virus varies across ethnicities

Quinones-Parra et al. 2014. PNAS.

2013 and earlier

The recent establishment of North American H10 lineage influenza viruses in Australian wild waterfowl and the evolution of Australian avian influenza viruses.

Dhanasekaran et al. 2013. J Viol.

Inferring patterns of influenza transmission in swine from multiple streams of surveillance data.

Strelioff et al. 2013. Proc Biol Sci.

Surveillance and characterization of avian influenza viruses from migratory water birds in eastern Hokkaido, the northern part of Japan, 2009-2010.

Abao et al. 2013. Virus Genes.

No evidence for intra-segment recombination of 2009 H1N1 influenza virus in swine.

Boni et al. 2012. Gene

Genetic analysis.

Smith et al. 2012. Methods Mol Biol.

Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans.

Bahl et al. 2011. PNAS

Long-term evolution and transmission dynamics of swine influenza A viruses.

Dhanasekaran et al. 2011. Nature

Ancient origins determine global biogeography of hot and cold desert cyanobacteria.

Bahl et al. 2011. Nat Comms

The emergence of pandemic influenza viruses.

Guan et al. 2011. Protein and Cell

Feasibility of reconstructed ancestral H5N1 influenza viruses for cross-clade protective vaccine development.

Ducatez et al. 2011. PNAS

Surveillance and analysis of avian influenza viruses, Australia.

Hansbro et al. 2010. Emerg Infect Dis.

Rapid detection of reassortment of pandemic H1N1/2009 influenza virus.

Poon et al. 2010. Clin. Chem.

Reassortment of pandemic H1N1/2009 viruses in swine.

Dhanasekaran et al. 2010. Science

Dating the emergence of pandemic influenza viruses.

Smith et al. 2009. PNAS

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic.

Smith et al. 2009. Nature

Evolutionary dynamics and emergence of panzootic H5N1 influenza viruses.

Dhanasekaran et al. 2008. PLoS Pathogens

Evolutionary insights into the ecology of coronaviruses.

Dhanasekaran et al. 2007. Journal of Virology